STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX79641.1Uncharacterized conserved protein PhnB, glyoxalase superfamily. (149 aa)    
Predicted Functional Partners:
SDZ40887.1
Hypothetical protein.
  
     0.744
SDZ44336.1
Helix-turn-helix domain-containing protein.
  
     0.709
SDX30365.1
EspG family protein.
  
     0.699
SDX81620.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.696
SDY65086.1
Hypothetical protein.
  
    0.696
SDX12088.1
Hypothetical protein.
  
     0.647
SDY00822.1
PPE family protein.
  
     0.645
SDX32025.1
Protein of unknown function.
  
    0.628
SDX30339.1
Hypothetical protein.
  
     0.624
SDZ40717.1
EspG family protein.
  
     0.612
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.