STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY06817.1DoxX-like family protein. (115 aa)    
Predicted Functional Partners:
SDY06784.1
Osmotically inducible protein OsmC.
  
    0.640
SDY06847.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.621
SDY33411.1
Hypothetical protein.
  
  
 0.507
SDW52184.1
ATPase family associated with various cellular activities (AAA).
  
  
  0.462
SDY03231.1
TIGR03086 family protein.
  
     0.443
SDX21227.1
Hypothetical protein.
  
     0.422
SDX73839.1
Hypothetical protein.
  
     0.408
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.