STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY38443.1ABC-2 type transport system ATP-binding protein. (306 aa)    
Predicted Functional Partners:
SDY38414.1
ABC-2 type transport system permease protein.
 
 
 0.928
SDY38474.1
Alpha-1,6-mannosyltransferase.
       0.736
SDX11099.1
Oleandomycin transport system permease protein.
 
 0.657
SDX28121.1
ABC-type polysaccharide/polyol phosphate export permease.
 
 0.642
SDW44263.1
ABC-2 type transport system permease protein.
  
 0.594
SDX76152.1
ABC-2 type transport system permease protein.
  
 0.594
SDZ31125.1
ABC-2 type transport system permease protein.
  
 0.594
SDY15134.1
Lipooligosaccharide transport system permease protein.
   
 
  0.581
SDY15167.1
Lipooligosaccharide transport system permease protein.
   
 
  0.581
mshC
L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.
  
   
 0.576
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.