STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY96689.1DNA-binding transcriptional regulator, MarR family. (137 aa)    
Predicted Functional Partners:
SDY96662.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
 
     0.832
SDY96641.1
Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.567
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
    
  0.509
SDX56892.1
PAP2 superfamily protein.
  
     0.492
SDY96562.1
Ribose transport system ATP-binding protein.
       0.458
SDY96589.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.458
SDY96615.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.458
SDY96540.1
Ribose transport system substrate-binding protein.
       0.445
SDX98139.1
Hypothetical protein.
  
     0.440
SDX95318.1
DNA-binding transcriptional activator of the SARP family.
  
    0.424
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.