STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ09305.1Probable F420-dependent oxidoreductase, MSMEG_2906 family. (263 aa)    
Predicted Functional Partners:
SDZ09262.1
Phytoene desaturase.
       0.776
SDZ09239.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
       0.769
SDZ09282.1
Phytoene synthase.
       0.762
SDY28198.1
F420-dependent oxidoreductase, G6PDH family.
  
     0.757
SDY80753.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
  
  0.755
SDY80837.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
  
 0.749
SDX83779.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
  
 0.746
SDW46393.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
  
  0.741
SDX63590.1
Amino acid adenylation domain-containing protein.
   
 0.723
SDY73210.1
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.720
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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