STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ16718.1Glycogen(starch) synthase. (417 aa)    
Predicted Functional Partners:
SDZ16943.1
1,4-alpha-glucan branching enzyme; Belongs to the glycosyl hydrolase 57 family.
 
 0.995
SDX09341.1
Trehalose 6-phosphate synthase.
    
 0.920
SDX82050.1
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.886
SDY14514.1
Hypothetical protein.
  
     0.712
SDZ36497.1
Trehalose 6-phosphate synthase.
    
 0.706
SDZ06999.1
Hypothetical protein.
  
    0.703
SDZ16092.1
Methyltransferase domain-containing protein.
  
     0.700
SDZ16958.1
Methyltransferase domain-containing protein.
 
   
 0.676
SDZ16556.1
Acetyltransferase (isoleucine patch superfamily).
 
  
 0.670
SDZ15991.1
Starch phosphorylase.
  
 0.653
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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