STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ36242.1Hydrogenase-4 component E. (221 aa)    
Predicted Functional Partners:
SDZ36271.1
Ni,Fe-hydrogenase III large subunit.
 
  
 0.999
SDZ36196.1
Ni,Fe-hydrogenase III small subunit.
 
  
 0.985
SDZ36225.1
Formate hydrogenlyase subunit 4.
 
  
 0.980
SDZ36257.1
Hydrogenase-4 component F.
 
  
 0.976
SDZ36213.1
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit.
 
  
 0.961
SDZ36284.1
Protein of unknown function.
       0.487
SDZ36298.1
Hypothetical protein.
       0.487
SDZ25768.1
Lysophospholipase, alpha-beta hydrolase superfamily.
  
     0.440
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.