STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ40649.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
SDZ40675.1
Hypothetical protein.
   
   0.790
SDZ40630.1
Hypothetical protein.
       0.779
SDZ40640.1
Hypothetical protein.
       0.779
SDZ40658.1
Hypothetical protein.
       0.779
SDZ40666.1
Hypothetical protein.
      
0.773
SDZ40684.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.762
SDZ40611.1
Hypothetical protein.
       0.627
SDZ40622.1
Hypothetical protein.
      
0.618
SDZ40692.1
Hypothetical protein.
  
  0.596
SDX77472.1
IMP dehydrogenase.
    
  0.564
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.