Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ADH85190.1PFAM: transposase IS4 family protein; KEGG: neu:NE1093 IS4 family transposase. (424 aa)    
Predicted Functional Partners:
ADH85191.1
Hypothetical protein.
       0.773
ADH87096.1
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: geo:Geob_0994 RNA-directed DNA polymerase (reverse transcriptase).
  
    0.513
ADH85192.1
PFAM: Restriction endonuclease BglII; KEGG: ajs:Ajs_0427 hypothetical protein.
       0.480
ADH85032.1
KEGG: swp:swp_2691 hypothetical protein.
  
     0.476
ADH85711.1
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: kpu:KP1_0613 hypothetical protein.
  
   
 0.465
ADH85193.1
PFAM: MT-A70 family protein; KEGG: cph:Cpha266_2137 MT-A70 family protein; Belongs to the MT-A70-like family.
       0.455
ADH85189.1
KEGG: gur:Gura_1234 hypothetical protein.
  
    0.437
ADH84768.1
KEGG: dal:Dalk_0467 hypothetical protein.
  
     0.418
ADH87321.1
SMART: Rhodanese domain protein; KEGG: gbm:Gbem_2963 Rhodanese domain protein.
  
     0.401
Your Current Organism:
Desulfurivibrio alkaliphilus
NCBI taxonomy Id: 589865
Other names: D. alkaliphilus AHT 2, Desulfurivibrio alkaliphilus AHT 2, Desulfurivibrio alkaliphilus str. AHT 2, Desulfurivibrio alkaliphilus strain AHT 2
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