STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADH85767.1PHP domain protein; KEGG: dat:HRM2_10850 two domain fusion protein includes: metal-dependent phosphoesterase / ribonuclease III; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein. (301 aa)    
Predicted Functional Partners:
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
      0.900
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
    0.821
ADH85768.1
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: dps:DP2235 Ntr family protein two-component system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase.
       0.814
ADH85769.1
KEGG: ppd:Ppro_0391 hypothetical protein.
       0.613
ADH86237.1
KEGG: dps:DP0901 hypothetical protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; Belongs to the SUA5 family.
 
    0.536
ADH85770.1
KEGG: glo:Glov_0694 hypothetical protein.
       0.528
ADH85766.1
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dps:DP1694 twitching mobility protein; SMART: AAA ATPase.
       0.460
ADH84852.1
PFAM: inositol monophosphatase; KEGG: gme:Gmet_0697 inositol monophosphatase.
      0.419
ADH85858.1
TIGRFAM: ribonuclease, Rne/Rng family; KEGG: dps:DP2581 cytoplasmic axial filament protein (ribonuclease G); PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein.
  
   
 0.412
Your Current Organism:
Desulfurivibrio alkaliphilus
NCBI taxonomy Id: 589865
Other names: D. alkaliphilus AHT 2, Desulfurivibrio alkaliphilus AHT 2, Desulfurivibrio alkaliphilus str. AHT 2, Desulfurivibrio alkaliphilus strain AHT 2
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