Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADH86656.1KEGG: dvl:Dvul_1921 hypothetical protein. (245 aa)    
Predicted Functional Partners:
ADH86657.1
KEGG: dde:Dde_2212 hypothetical protein.
 
    
0.782
ADH86655.1
Hypothetical protein; KEGG: rpd:RPD_4354 ABC transporter related.
       0.618
ADH86654.1
KEGG: hypothetical protein LOC690456.
       0.573
ADH86658.1
Hypothetical protein.
       0.439
ADH86659.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_0112 putative amidase.
       0.439
ADH86672.1
KEGG: drt:Dret_0682 hypothetical protein.
  
     0.424
ADH86674.1
KEGG: cts:Ctha_2615 hypothetical protein.
  
     0.423
Your Current Organism:
Desulfurivibrio alkaliphilus
NCBI taxonomy Id: 589865
Other names: D. alkaliphilus AHT 2, Desulfurivibrio alkaliphilus AHT 2, Desulfurivibrio alkaliphilus str. AHT 2, Desulfurivibrio alkaliphilus strain AHT 2
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