STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADH86918.1KEGG: tgr:Tgr7_2709 lytic murein transglycosylase B. (330 aa)    
Predicted Functional Partners:
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
     0.795
ADH86919.1
KEGG: pca:Pcar_0196 hypothetical protein.
       0.773
ADH86971.1
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.738
ADH86917.1
KEGG: tbd:Tbd_0209 hypothetical protein.
 
     0.712
ADH86920.1
TIGRFAM: general secretion pathway protein C; KEGG: tgr:Tgr7_0224 general secretion pathway protein C.
       0.603
ilvD
TIGRFAM: dihydroxy-acid dehydratase; KEGG: sfu:Sfum_0356 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
       0.599
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.499
ADH86927.1
KEGG: tgr:Tgr7_0236 general secretion pathway protein L; TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L.
       0.499
ADH86928.1
PFAM: General secretion pathway M protein; KEGG: tgr:Tgr7_0237 general secretion pathway M protein.
       0.499
ADH86921.1
KEGG: aeh:Mlg_2401 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein.
       0.495
Your Current Organism:
Desulfurivibrio alkaliphilus
NCBI taxonomy Id: 589865
Other names: D. alkaliphilus AHT 2, Desulfurivibrio alkaliphilus AHT 2, Desulfurivibrio alkaliphilus str. AHT 2, Desulfurivibrio alkaliphilus strain AHT 2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.