Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ADH87164.1PFAM: DNA polymerase III delta; KEGG: dps:DP0888 hypothetical protein. (478 aa)    
Predicted Functional Partners:
ADH86779.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 
 0.989
ADH86095.1
TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dps:DP1663 DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein.
  
 0.986
ADH86565.1
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: dps:DP0784 DNA polymerase III, delta subunit; SMART: AAA ATPase.
 
 
 0.981
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.974
ADH85413.1
KEGG: cyn:Cyan7425_2432 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
    
 0.951
ADH85658.1
SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: dde:Dde_0628 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III.
    
 0.919
ADH86188.1
KEGG: dps:DP0897 hypothetical protein.
  
     0.721
ADH86341.1
KEGG: dps:DP0068 hypothetical protein.
  
     0.651
ADH86975.1
KEGG: dps:DP0111 hypothetical protein.
  
     0.646
ADH87166.1
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     
 0.646
Your Current Organism:
Desulfurivibrio alkaliphilus
NCBI taxonomy Id: 589865
Other names: D. alkaliphilus AHT 2, Desulfurivibrio alkaliphilus AHT 2, Desulfurivibrio alkaliphilus str. AHT 2, Desulfurivibrio alkaliphilus strain AHT 2
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