STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJP45055.1Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)    
Predicted Functional Partners:
AJP43947.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.933
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
  
0.911
AJP43308.1
Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.908
AJP44624.1
Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.908
AJP45054.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
AJP45053.1
Threonine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.707
AJP45052.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.502
AJP45051.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.493
Your Current Organism:
Alteromonas australica
NCBI taxonomy Id: 589873
Other names: A. australica, Alteromonas australica Ivanova et al. 2013, Alteromonas sp. H17, CIP 109921, KMM 6016, strain H 17
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