STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyoEProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (304 aa)    
Predicted Functional Partners:
cyoB
Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
 
 0.996
AJP45428.1
Cytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
cyoD
Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.987
AJP44087.1
Cytochrome Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.938
hemH
Ferrochelatase; Protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.932
AJP44084.1
Cbb3-type cytochrome c oxidase subunit I; CcoN; FixN; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.914
AJP44085.1
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.911
AJP44086.1
Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AJP45426.1
Cytochrome oxidase biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.894
AJP45424.1
Electron transporter SenC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.887
Your Current Organism:
Alteromonas australica
NCBI taxonomy Id: 589873
Other names: A. australica, Alteromonas australica Ivanova et al. 2013, Alteromonas sp. H17, CIP 109921, KMM 6016, strain H 17
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