STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ferp_0401PFAM: protein of unknown function DUF1446; KEGG: amt:Amet_4243 hypothetical protein. (436 aa)    
Predicted Functional Partners:
Ferp_0402
KEGG: amt:Amet_4242 hypothetical protein.
 
     0.943
Ferp_0403
KEGG: afu:AF0365 hypothetical protein.
       0.676
Ferp_0400
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: amt:Amet_0230 TRAP transporter solute receptor TAXI family protein.
       0.502
Ferp_0404
PFAM: IS1 transposase; transposase IS3/IS911 family protein; KEGG: dge:Dgeo_3100 IS1 transposase.
       0.490
Ferp_0398
PFAM: CopG domain protein DNA-binding domain protein; KEGG: afu:AF0365 hypothetical protein.
       0.420
Ferp_0399
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: gtn:GTNG_2975 hypothetical protein.
       0.420
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.