Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ferp_1908KEGG: rci:RCIX256 hypothetical protein. (1390 aa)    
Predicted Functional Partners:
Ferp_1907
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hoh:Hoch_4783 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.551
Ferp_1909
KEGG: mvn:Mevan_0986 hypothetical protein.
       0.538
Ferp_0431
PFAM: peptidase M10A and M12B matrixin and adamalysin; KEGG: mtp:Mthe_1183 hypothetical protein.
  
     0.467
Ferp_1905
PFAM: PilT protein domain protein; KEGG: tpe:Tpen_0050 hypothetical protein.
       0.402
Ferp_1906
KEGG: sid:M164_2194 hypothetical protein.
       0.402
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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