STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ferp_2193PFAM: HEPN domain protein; KEGG: afu:AF1709 hypothetical protein. (307 aa)    
Predicted Functional Partners:
Ferp_2192
PFAM: restriction modification system DNA specificity domain; KEGG: pab:PAB2150 type I restriction-modification enzyme, S subunit.
       0.786
Ferp_2189
PFAM: DNA polymerase beta domain protein region; KEGG: mja:MJ0604 hypothetical protein.
       0.773
Ferp_2190
PFAM: HEPN domain protein; KEGG: mja:MJ0605 hypothetical protein.
       0.773
Ferp_2191
KEGG: mja:MJ0131 hypothetical protein.
       0.773
Ferp_2186
PFAM: N-6 DNA methylase; KEGG: pab:PAB2149 type I restriction modification enzyme, subunit M.
       0.765
Ferp_2187
PFAM: Protein of unknown function DUF104; KEGG: afu:AF0319 hypothetical protein.
       0.762
Ferp_2188
PFAM: stem cell self-renewal protein Piwi domain protein; KEGG: mja:MJ1321 hypothetical protein.
       0.762
Ferp_2194
Type I site-specific deoxyribonuclease, HsdR family; KEGG: mja:MJ0124m type I restriction-modification enzyme, helicase subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase.
       0.726
Ferp_2196
KEGG: mja:MJ0123 hypothetical protein.
       0.554
Ferp_2195
KEGG: DNAJ protein.
       0.544
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.