STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ferp_2272PFAM: Protein of unknown function DUF2284, metal-binding; KEGG: afu:AF0391 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Ferp_2273
PFAM: ribosomal RNA adenine methylase transferase; KEGG: afu:AF0732 cobalamin biosynthesis precorrin-8W decarboxylase (CbiT).
 
     0.715
Ferp_2206
PFAM: Protein of unknown function DUF2284, metal-binding; KEGG: sfu:Sfum_2843 metal-binding protein-like.
  
     0.666
Ferp_2274
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: afu:AF0727 cobalamin biosynthesis precorrin-2 methyltransferase (CbiL).
       0.661
Ferp_2275
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: afu:AF0726 cobalamin biosynthesis precorrin-3 methylase (CbiF).
       0.661
Ferp_2271
PFAM: Rubrerythrin; KEGG: pfu:PF1191 hypothetical protein.
 
     0.570
Ferp_2281
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: afu:AF2180 hypothetical protein.
       0.524
Ferp_2276
PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: afu:AF0725 cobalamin biosynthesis precorrin methylase (CbiG).
       0.523
Ferp_2277
TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: afu:AF0724 cobalamin biosynthesis precorrin-3 methylase (CbiH).
       0.523
Ferp_2278
PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: mbu:Mbur_2355 precorrin-8X methylmutase.
       0.523
Ferp_2279
PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: afu:AF0723 cobalt-precorrin-6A synthase.
       0.523
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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