STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ferp_2332PFAM: Protein of unknown function DUF128; Ribonuclease R winged-helix domain protein; KEGG: dth:DICTH_1671 hypothetical protein. (334 aa)    
Predicted Functional Partners:
Ferp_2335
KEGG: hypothetical protein.
       0.786
Ferp_2334
KEGG: mta:Moth_0154 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase.
       0.774
Ferp_2333
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0721 4Fe-4S ferredoxin, iron-sulfur binding.
       0.773
Ferp_2336
TIGRFAM: MoaD family protein; PFAM: thiamineS protein; KEGG: pai:PAE2580 hypothetical protein.
       0.773
Ferp_2329
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpe:RPE_3222 butyryl-CoA dehydrogenase.
 
     0.735
Ferp_2330
PFAM: cobalamin B12-binding domain protein; KEGG: afu:AF2219 methylmalonyl-CoA mutase, subunit alpha, C-terminus (mcmA2).
       0.700
Ferp_2331
KEGG: eba:ebA2060 methylmalonyl-CoA mutase subunit alpha; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
       0.700
Ferp_1333
PFAM: amidohydrolase 2; KEGG: sat:SYN_01623 amidohydrolase.
 
     0.552
Ferp_0672
KEGG: hypothetical protein.
  
     0.501
Ferp_0825
PFAM: Protein of unknown function UPF0146; KEGG: afu:AF0740a hypothetical protein; Belongs to the UPF0146 family.
  
     0.501
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.