Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ferp_2425PFAM: glycosyl transferase family 2; KEGG: afu:AF0620 succinoglycan biosynthesis protein (ExoM). (298 aa)    
Predicted Functional Partners:
Ferp_2437
PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: afu:AF0380 transmembrane oligosaccharyl transferase, putative.
     
 0.733
Ferp_1891
PFAM: glycosyl transferase family 2; KEGG: afu:AF0387 glycosyltransferase, putative.
 
   
 0.663
Ferp_2384
Nucleotide sugar dehydrogenase; KEGG: afu:AF0596 UDP-glucose dehydrogenase (ugd-2); TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
  
   
 0.588
Ferp_2284
PFAM: glycosyl transferase family 2; KEGG: afu:AF0581 dolichol-P-glucose synthetase, putative.
 
   
 0.537
Ferp_2005
PFAM: polysaccharide biosynthesis protein; KEGG: afu:AF0595 polysaccharide biosynthesis protein, putative.
     
 0.524
Ferp_2478
PFAM: Domain of unknown function DUF2402, GPI-anchored glycine/serine rich; periplasmic copper-binding; SMART: Carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; KEGG: afu:AF0275 surface layer protein B (SlgB-1).
  
   
 0.492
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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