STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ferp_2547PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: msl:Msil_1993 radical SAM domain protein. (345 aa)    
Predicted Functional Partners:
Ferp_2548
TIGRFAM: methanogenesis marker protein 11; PFAM: domain of unknown function DUF1743; KEGG: mth:MTH1391 hypothetical protein.
 
     0.845
Ferp_0060
TIGRFAM: methanogenesis marker protein 2; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: mtp:Mthe_0762 AIR synthase-like protein.
 
     0.795
Ferp_2549
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afu:AF1554 thioredoxin reductase (TrxB).
       0.602
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.