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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpoALppC family lipoprotein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family. (687 aa)    
Predicted Functional Partners:
ACZ75214.1
PFAM: protein of unknown function UPF0102; KEGG: dze:Dd1591_3783 protein of unknown function UPF0102; Belongs to the UPF0102 family.
 
   
 0.840
ACZ78637.1
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: dze:Dd1591_0253 penicillin-binding protein, 1A family.
  
 
 
 0.789
ACZ75776.1
KEGG: dze:Dd1591_3203 hypothetical protein.
  
     0.760
ACZ77073.1
PFAM: cytoplasmic chaperone TorD family protein; KEGG: dze:Dd1591_2279 cytoplasmic chaperone TorD family protein.
  
     0.758
ACZ78871.1
PFAM: protein of unknown function DUF1145; KEGG: dze:Dd1591_4067 protein of unknown function DUF1145.
  
     0.756
ACZ76823.1
KEGG: dze:Dd1591_1974 hypothetical protein.
  
     0.748
matP
Protein of unknown function DUF1047; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
   
 0.741
ACZ77072.1
PFAM: protein of unknown function DUF1439; KEGG: dze:Dd1591_2278 protein of unknown function DUF1439.
  
     0.729
ACZ76006.1
KEGG: dze:Dd1591_2978 hypothetical protein.
  
     0.702
secM
Secretion monitor family proten; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.702
Your Current Organism:
Dickeya zeae
NCBI taxonomy Id: 590409
Other names: D. zeae Ech586, Dickeya dadantii Ech586, Dickeya zeae Ech586
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