Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACZ76767.1KEGG: dze:Dd1591_1909 hypothetical protein. (133 aa)    
Predicted Functional Partners:
ACZ76766.1
KEGG: dze:Dd1591_1908 type III secretion lipoprotein.
     
 0.842
ACZ76764.1
KEGG: dze:Dd1591_1906 type III secretion protein.
     
 0.770
ACZ76765.1
TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: dze:Dd1591_1907 type III secretion outer membrane pore, YscC/HrcC family.
     
 0.709
ACZ76763.1
PFAM: HrpF family protein; KEGG: dze:Dd1591_1905 HrpF family protein.
       0.708
ACZ76768.1
PFAM: Harpin family protein; KEGG: dze:Dd1591_1910 harpin family protein.
       0.497
Your Current Organism:
Dickeya zeae
NCBI taxonomy Id: 590409
Other names: D. zeae Ech586, Dickeya dadantii Ech586, Dickeya zeae Ech586
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