STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ76858.1PFAM: Pectate lyase; KEGG: dze:Dd1591_2020 pectate lyase. (375 aa)    
Predicted Functional Partners:
ACZ76857.1
KEGG: dze:Dd1591_2019 potential HrpW-specific chaperone.
       0.824
ACZ77772.1
PFAM: Pectate lyase; KEGG: dze:Dd1591_1273 pectate lyase.
  
     0.772
ACZ78618.1
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: dze:Dd1591_0271 pectate lyase/Amb allergen.
  
   
 0.762
ACZ76356.1
KEGG: dze:Dd1591_1528 parallel beta-helix repeat protein.
  
    0.761
ACZ78619.1
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: dze:Dd1591_0270 pectate lyase/Amb allergen.
  
   
 0.761
ACZ76357.1
Cellulase; KEGG: dze:Dd1591_1529 cellulase; PFAM: glycoside hydrolase family 5; Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.752
ACZ77920.1
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: dze:Dd1591_1089 pectate lyase/Amb allergen.
  
   
 0.738
ACZ76860.1
KEGG: dze:Dd1591_2022 putative avirulence protein.
     
 0.734
ACZ77919.1
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: dze:Dd1591_1090 pectate lyase/Amb allergen.
  
   
 0.734
ACZ77918.1
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: dze:Dd1591_1091 pectate lyase/Amb allergen.
  
   
 0.727
Your Current Organism:
Dickeya zeae
NCBI taxonomy Id: 590409
Other names: D. zeae Ech586, Dickeya dadantii Ech586, Dickeya zeae Ech586
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