STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ78042.1Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; KEGG: dze:Dd1591_0959 two component transcriptional regulator, LytTR family. (241 aa)    
Predicted Functional Partners:
ACZ78043.1
KEGG: dze:Dd1591_0958 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein.
 
 0.997
ACZ78672.1
KEGG: dze:Dd1591_0222 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein.
 
 0.987
ACZ77236.1
KEGG: dze:Dd1591_2444 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
 
 0.875
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.583
ACZ75589.1
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dze:Dd1591_3355 pyruvate ferredoxin/flavodoxin oxidoreductase.
  
    0.512
ACZ78041.1
PFAM: carbon starvation protein CstA; KEGG: dda:Dd703_0958 carbon starvation protein CstA.
     
 0.484
ACZ75272.1
PFAM: conserved hypothetical protein; KEGG: dze:Dd1591_3734 hypothetical protein.
  
     0.441
ACZ78044.1
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dda:Dd703_0955 transcriptional regulator, GntR family.
       0.440
Your Current Organism:
Dickeya zeae
NCBI taxonomy Id: 590409
Other names: D. zeae Ech586, Dickeya dadantii Ech586, Dickeya zeae Ech586
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