STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACZ78499.1PFAM: peptidase M50; KEGG: dze:Dd1591_0390 peptidase M50. (707 aa)    
Predicted Functional Partners:
ACZ78500.1
PFAM: secretion protein HlyD family protein; KEGG: dze:Dd1591_0389 hypothetical protein.
 
     0.952
ACZ78501.1
PFAM: secretion protein HlyD family protein; KEGG: dze:Dd1591_0388 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.944
ACZ78496.1
PFAM: outer membrane efflux protein; KEGG: dze:Dd1591_0393 outer membrane efflux protein.
 
     0.835
ACZ78497.1
PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: dze:Dd1591_0392 Ig family protein.
 
  
 0.823
ACZ76405.1
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.778
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
  
 0.751
ACZ76399.1
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.741
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
  
 0.728
ACZ78498.1
PFAM: Tail Collar domain protein; KEGG: dda:Dd703_0480 tail collar domain protein.
 
     0.683
ACZ76406.1
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.609
Your Current Organism:
Dickeya zeae
NCBI taxonomy Id: 590409
Other names: D. zeae Ech586, Dickeya dadantii Ech586, Dickeya zeae Ech586
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