G3B6I4_CANTC protein (Yamadazyma tenuis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3B6I4_CANTC

rRNA processing. (157 aa)

Predicted Functional Partners:

G3BBV3_CANTC

0.961

G3BEW9_CANTC

0.793

G3B858_CANTC

0.750

G3B502_CANTC

0.584

G3B4H3_CANTC

0.582

SPB1

0.525

G3BDJ2_CANTC

0.465

G3B5N5_CANTC

0.455

G3BC58_CANTC

0.453

G3BEY3_CANTC

0.447

Your Current Organism:

Yamadazyma tenuis

NCBI taxonomy Id: 590646
Other names: Candida tenuis ATCC 10573, Y. tenuis ATCC 10573, Yamadazyma tenuis ATCC 10573

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3B4H3_CANTC	G3B502_CANTC	G3B4H3	G3B502	rRNA-processing protein EFG1.	Uncharacterized protein.	0.666
G3B4H3_CANTC	G3B5N5_CANTC	G3B4H3	G3B5N5	rRNA-processing protein EFG1.	G-patch domain-containing protein.	0.406
G3B4H3_CANTC	G3B6I4_CANTC	G3B4H3	G3B6I4	rRNA-processing protein EFG1.	rRNA processing.	0.582
G3B4H3_CANTC	G3B858_CANTC	G3B4H3	G3B858	rRNA-processing protein EFG1.	Uncharacterized protein.	0.757
G3B4H3_CANTC	G3BC58_CANTC	G3B4H3	G3BC58	rRNA-processing protein EFG1.	RNA-binding domain-containing protein.	0.472
G3B4H3_CANTC	G3BDJ2_CANTC	G3B4H3	G3BDJ2	rRNA-processing protein EFG1.	rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family.	0.582
G3B4H3_CANTC	G3BEW9_CANTC	G3B4H3	G3BEW9	rRNA-processing protein EFG1.	Uncharacterized protein.	0.800
G3B4H3_CANTC	SPB1	G3B4H3	G3B418	rRNA-processing protein EFG1.	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.456
G3B502_CANTC	G3B4H3_CANTC	G3B502	G3B4H3	Uncharacterized protein.	rRNA-processing protein EFG1.	0.666
G3B502_CANTC	G3B6I4_CANTC	G3B502	G3B6I4	Uncharacterized protein.	rRNA processing.	0.584
G3B502_CANTC	G3B858_CANTC	G3B502	G3B858	Uncharacterized protein.	Uncharacterized protein.	0.465
G3B502_CANTC	G3BC58_CANTC	G3B502	G3BC58	Uncharacterized protein.	RNA-binding domain-containing protein.	0.615
G3B502_CANTC	G3BDJ2_CANTC	G3B502	G3BDJ2	Uncharacterized protein.	rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family.	0.587
G3B502_CANTC	G3BEW9_CANTC	G3B502	G3BEW9	Uncharacterized protein.	Uncharacterized protein.	0.796
G3B502_CANTC	G3BEY3_CANTC	G3B502	G3BEY3	Uncharacterized protein.	Rsa3 domain-containing protein.	0.463
G3B502_CANTC	SPB1	G3B502	G3B418	Uncharacterized protein.	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.926
G3B5N5_CANTC	G3B4H3_CANTC	G3B5N5	G3B4H3	G-patch domain-containing protein.	rRNA-processing protein EFG1.	0.406
G3B5N5_CANTC	G3B6I4_CANTC	G3B5N5	G3B6I4	G-patch domain-containing protein.	rRNA processing.	0.455
G3B5N5_CANTC	G3B858_CANTC	G3B5N5	G3B858	G-patch domain-containing protein.	Uncharacterized protein.	0.448
G3B5N5_CANTC	G3BBV3_CANTC	G3B5N5	G3BBV3	G-patch domain-containing protein.	HA2-domain-containing protein.	0.964