G3BAU3_CANTC protein (Yamadazyma tenuis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3BAU3_CANTC

RPOL4c domain-containing protein. (190 aa)

Predicted Functional Partners:

G3AW40_CANTC

0.999

G3AW42_CANTC

0.999

G3B167_CANTC

0.999

G3B1F5_CANTC

0.999

G3B2S0_CANTC

0.999

G3B2V6_CANTC

0.999

G3B663_CANTC

0.999

G3B705_CANTC

0.999

G3B7M9_CANTC

0.999

G3B9Y0_CANTC

0.999

Your Current Organism:

Yamadazyma tenuis

NCBI taxonomy Id: 590646
Other names: Candida tenuis ATCC 10573, Y. tenuis ATCC 10573, Yamadazyma tenuis ATCC 10573

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3AW40_CANTC	G3AW42_CANTC	G3AW40	G3AW42	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
G3AW40_CANTC	G3B167_CANTC	G3AW40	G3B167	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
G3AW40_CANTC	G3B1F5_CANTC	G3AW40	G3B1F5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RBP11-like subunits of RNA polymerase.	0.999
G3AW40_CANTC	G3B2S0_CANTC	G3AW40	G3B2S0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Insert subdomain of RNA polymerase alpha subunit.	0.999
G3AW40_CANTC	G3B2V6_CANTC	G3AW40	G3B2V6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Subunit common to RNA polymerases I, II, and.	0.999
G3AW40_CANTC	G3B663_CANTC	G3AW40	G3B663	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
G3AW40_CANTC	G3B705_CANTC	G3AW40	G3B705	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_Rpb1_5 domain-containing protein.	0.999
G3AW40_CANTC	G3B7M9_CANTC	G3AW40	G3B7M9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
G3AW40_CANTC	G3B9Y0_CANTC	G3AW40	G3B9Y0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
G3AW40_CANTC	G3BAU3_CANTC	G3AW40	G3BAU3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
G3AW42_CANTC	G3AW40_CANTC	G3AW42	G3AW40	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
G3AW42_CANTC	G3B167_CANTC	G3AW42	G3B167	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
G3AW42_CANTC	G3B1F5_CANTC	G3AW42	G3B1F5	Uncharacterized protein.	RBP11-like subunits of RNA polymerase.	0.999
G3AW42_CANTC	G3B2S0_CANTC	G3AW42	G3B2S0	Uncharacterized protein.	Insert subdomain of RNA polymerase alpha subunit.	0.999
G3AW42_CANTC	G3B2V6_CANTC	G3AW42	G3B2V6	Uncharacterized protein.	Subunit common to RNA polymerases I, II, and.	0.999
G3AW42_CANTC	G3B663_CANTC	G3AW42	G3B663	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
G3AW42_CANTC	G3B705_CANTC	G3AW42	G3B705	Uncharacterized protein.	RNA_pol_Rpb1_5 domain-containing protein.	0.999
G3AW42_CANTC	G3B7M9_CANTC	G3AW42	G3B7M9	Uncharacterized protein.	Uncharacterized protein.	0.999
G3AW42_CANTC	G3B9Y0_CANTC	G3AW42	G3B9Y0	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
G3AW42_CANTC	G3BAU3_CANTC	G3AW42	G3BAU3	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999