STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BST39_07550Hypothetical protein; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)    
Predicted Functional Partners:
BST39_07140
Hypothetical protein; Internal stop; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.967
ORB40929.1
acyl-ACP desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.871
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
    
  0.871
ORB43860.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.855
ORB45706.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.836
ORB40915.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.836
ORB39182.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.836
ORB33916.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.836
BST39_26445
Glutamine ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.832
ORB41582.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.817
Your Current Organism:
Mycobacterium paraseoulense
NCBI taxonomy Id: 590652
Other names: DSM 45000, JCM 16952, KCTC 19145, M. paraseoulense, Mycobacterium paraseoulense Lee et al. 2010, Mycobacterium sp. 31118, strain 31118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.