Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORB43953.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)    
Predicted Functional Partners:
ORB43952.1
MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.606
ORB43954.1
Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.597
ORB43945.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
ORB43948.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
ORB43949.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
ORB43946.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
ORB43947.1
MCE-family protein MCE1A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
ORB43950.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
ORB43951.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
Your Current Organism:
Mycobacterium paraseoulense
NCBI taxonomy Id: 590652
Other names: DSM 45000, JCM 16952, KCTC 19145, M. paraseoulense, Mycobacterium paraseoulense Lee et al. 2010, Mycobacterium sp. 31118, strain 31118
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