STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0051Helix-turn-helix domain protein; KEGG: fre:Franean1_4921 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (176 aa)    
Predicted Functional Partners:
Celf_2150
KEGG: hypothetical protein.
  
     0.684
Celf_3022
PFAM: Septum formation initiator; KEGG: septum formation initiator.
  
     0.643
Celf_1508
PFAM: Protein of unknown function DUF2469; KEGG: protein of unknown function DUF2469.
  
     0.629
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
    0.622
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.590
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
   
 0.577
Celf_1937
SMART: regulatory protein MerR; KEGG: transcriptional regulator, MerR family.
  
    0.560
Celf_0052
Manually curated; TIGRFAM: MATE efflux family protein; KEGG: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.
 
     0.504
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
   
 0.501
Celf_2123
KEGG: hypothetical protein.
  
     0.498
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.