STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0064PFAM: major facilitator superfamily MFS_1; KEGG: nml:Namu_0688 major facilitator superfamily MFS_1. (403 aa)    
Predicted Functional Partners:
Celf_0067
PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3100 glycosyl transferase family protein.
   
   0.777
Celf_0063
PFAM: Endoribonuclease L-PSP; KEGG: gym:GYMC10_4005 endoribonuclease L-PSP.
       0.773
Celf_0065
PFAM: polysaccharide deacetylase; KEGG: met:M446_6088 polysaccharide deacetylase.
       0.773
Celf_0066
KEGG: bgr:Bgr_16250 hypothetical protein.
       0.773
Celf_0068
PFAM: FAD dependent oxidoreductase; KEGG: ure:UREG_05579 hypothetical protein.
       0.762
Celf_0069
PFAM: glycosyl transferase family 2; KEGG: fal:FRAAL2590 hypothetical protein.
       0.762
Celf_1291
PFAM: Protein of unknown function DUF2505; KEGG: protein of unknown function DUF2505.
  
     0.620
Celf_1050
KEGG: putative F420-dependent oxidoreductase; TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like, subgroup.
 
      0.438
Celf_3602
KEGG: HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.
  
     0.402
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.