STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0074TIGRFAM: histidine ammonia-lyase; KEGG: bcv:Bcav_1837 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase. (543 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 0.999
hutI
TIGRFAM: imidazolonepropionase; KEGG: bcv:Bcav_1839 imidazolonepropionase; PFAM: amidohydrolase.
 
  
 0.996
Celf_0071
KEGG: nml:Namu_0039 formiminoglutamate deiminase; TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase.
 
  
 0.934
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.933
Celf_0072
TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: sro:Sros_1779 allantoate amidohydrolase; PFAM: peptidase M20.
     
 0.827
Celf_1339
PFAM: amidohydrolase; KEGG: amidohydrolase, imidazolonepropionase.
  
  
 0.766
Celf_1499
PFAM: amidohydrolase; KEGG: amidohydrolase.
  
  
 0.766
Celf_2137
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: cai:Caci_8299 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
  
 0.760
Celf_3081
PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: beta-N-acetylhexosaminidase.
   
    0.721
Celf_0075
KEGG: bcv:Bcav_1836 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
 
   
 0.714
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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