STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0132Aminopeptidase Y; KEGG: peptidase M28; PFAM: peptidase M28; protease-associated PA domain protein. (517 aa)    
Predicted Functional Partners:
Celf_0308
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: fgr:FG01932.1 similar to AF401237_1 cystathionine beta-lyase.
 
 
 
 0.648
Celf_1127
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sro:Sros_2479 streptogrisin C.
 
     0.572
Celf_3075
KEGG: glucose sorbosone dehydrogenase.
  
   
 0.517
Celf_0639
PFAM: protein of unknown function DUF541; KEGG: msm:MSMEG_6215 hypothetical protein.
  
   
 0.507
Celf_0182
KEGG: AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
     
 0.481
Celf_0133
KEGG: transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
       0.461
Celf_2278
KEGG: PA14 domain protein; PFAM: PKD domain containing protein; SMART: PA14 domain protein; PKD domain containing protein.
  
   
 0.424
Celf_0398
KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin.
  
     0.423
Celf_1340
KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin.
  
     0.415
Celf_3155
Alpha-N-arabinofuranosidase; PFAM: Ricin B lectin; KEGG: scb:SCAB_79241 putative arabinofuranosidase; SMART: Ricin B lectin.
  
     0.406
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.