STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0133KEGG: transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR. (130 aa)    
Predicted Functional Partners:
Celf_0134
PFAM: major facilitator superfamily MFS_1; KEGG: cmi:CMM_2531 putative sugar MFS-permease.
 
     0.656
Celf_0135
PFAM: YCII-related; KEGG: bcv:Bcav_4112 YCII-related protein.
       0.482
Celf_0132
Aminopeptidase Y; KEGG: peptidase M28; PFAM: peptidase M28; protease-associated PA domain protein.
       0.461
Celf_1407
Transcriptional regulator, GntR family; KEGG: putative histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
   
  
 0.456
Celf_0136
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: sro:Sros_5547 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
       0.454
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.