STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0138KEGG: ddr:Deide_01550 putative cytochrome P450. (429 aa)    
Predicted Functional Partners:
Celf_1428
Glycosyltransferase, MGT family; KEGG: fal:FRAAL1959 putative glycosyltransferase (N-glycosyltransferase) (N-glycosyl transferase NGT); TIGRFAM: glycosyltransferase, MGT family; PFAM: glycosyl transferase family 28.
  
 
 0.965
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.930
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.892
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.882
Celf_0920
PFAM: AMP-dependent synthetase and ligase; KEGG: AMP-dependent synthetase and ligase.
  
 0.781
Celf_2635
PFAM: AMP-dependent synthetase and ligase; KEGG: cmi:CMM_2418 putative long-chain-fatty-acid-CoA ligase.
  
 0.781
Celf_2960
PFAM: AMP-dependent synthetase and ligase; KEGG: AMP-dependent synthetase and ligase.
  
 0.781
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
    
  0.724
Celf_3212
PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; KEGG: xca:xccb100_1731 glycosyltransferase.
  
 
 0.719
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
   0.668
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.