STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0141PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xce:Xcel_3298 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Celf_0142
KEGG: cwo:Cwoe_0405 hypothetical protein.
       0.512
Celf_2722
KEGG: sen:SACE_2703 hypothetical protein.
  
     0.512
Celf_0123
KEGG: bcv:Bcav_0741 protein of unknown function DUF664.
  
   
 0.488
Celf_1221
KEGG: rsa:RSal33209_3106 putative mini-circle protein.
  
   
 0.470
Celf_0140
PFAM: glycoside hydrolase family 3 domain protein; KEGG: sgr:SGR_3126 putative beta-glucosidase.
       0.465
Celf_0139
PFAM: PspC domain protein; KEGG: kra:Krad_0132 phage shock protein C, PspC.
 
     0.412
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.