STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0156PFAM: coagulation factor 5/8 type domain protein; KEGG: hypothetical protein. (517 aa)    
Predicted Functional Partners:
Celf_2655
KEGG: 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; catalytic domain-containing protein of components of various dehydrogenase complexes.
    
 
 0.971
Celf_0029
KEGG: serine/threonine protein kinase with PASTA sensor(s); PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; PASTA domain containing protein.
   
 
 0.901
Celf_2169
KEGG: serine/threonine protein kinase with PASTA sensor(s); PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; PASTA domain containing protein.
   
 
 0.901
Celf_0157
TIGRFAM: phage tail protein; KEGG: phage tail protein.
       0.821
Celf_0159
PFAM: GPW/gp25 family protein; KEGG: gpW/GP25 family protein.
       0.821
Celf_0158
KEGG: baseplate J family protein.
       0.807
Celf_0160
TIGRFAM: Rhs element Vgr protein; KEGG: rhs element Vgr protein.
       0.806
Celf_0161
PFAM: Peptidoglycan-binding lysin domain; KEGG: peptidoglycan-binding lysin domain protein.
       0.806
Celf_0162
TIGRFAM: conserved hypothetical protein; KEGG: hypothetical protein.
       0.806
Celf_0165
KEGG: hypothetical protein.
       0.717
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.