STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0184PFAM: WD40-like beta Propeller containing protein; KEGG: putative FHA domain containing protein. (1131 aa)    
Predicted Functional Partners:
Celf_0166
TIGRFAM: conserved hypothetical protein; KEGG: hypothetical protein.
 
 
   0.789
Celf_0182
KEGG: AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
 
  
 0.782
Celf_0161
PFAM: Peptidoglycan-binding lysin domain; KEGG: peptidoglycan-binding lysin domain protein.
 
 
   0.770
Celf_0158
KEGG: baseplate J family protein.
 
 
   0.744
Celf_0162
TIGRFAM: conserved hypothetical protein; KEGG: hypothetical protein.
 
 
   0.729
Celf_0185
KEGG: transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
 
     0.712
Celf_0157
TIGRFAM: phage tail protein; KEGG: phage tail protein.
 
     0.702
Celf_0160
TIGRFAM: Rhs element Vgr protein; KEGG: rhs element Vgr protein.
 
  
 0.700
Celf_0183
KEGG: hypothetical protein.
 
     0.664
Celf_0159
PFAM: GPW/gp25 family protein; KEGG: gpW/GP25 family protein.
 
 
   0.655
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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