STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0210KEGG: nml:Namu_3024 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Celf_0649
PFAM: PspA/IM30 family protein; KEGG: phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
 
 0.869
Celf_0209
PFAM: toxic anion resistance family protein; KEGG: nml:Namu_3025 toxic anion resistance family protein.
  
  
 0.832
Celf_0212
KEGG: nml:Namu_3022 hypothetical protein.
       0.806
Celf_0211
PFAM: stress protein; KEGG: nml:Namu_3023 stress protein.
  
    0.784
Celf_0249
PFAM: membrane protein of unknown function; KEGG: membrane protein of unknown function.
  
    0.679
Celf_0207
PFAM: stress protein; KEGG: sco:SCO0641 tellurium resistance protein.
  
    0.492
Celf_0208
PFAM: stress protein; KEGG: scb:SCAB_81661 tellurium resistance protein.
  
    0.492
Celf_0215
KEGG: sco:SCO2361 hypothetical protein.
       0.441
Celf_0216
KEGG: phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
       0.438
Celf_0213
KEGG: citrate lyase beta subunit.
       0.436
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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