STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0226PFAM: ABC-2 type transporter; KEGG: ABC-2 type transporter. (271 aa)    
Predicted Functional Partners:
Celf_0223
KEGG: hypothetical protein.
 
     0.961
Celf_0224
KEGG: hypothetical protein.
 
     0.947
Celf_0225
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.945
Celf_2517
KEGG: nml:Namu_4204 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.902
Celf_0222
PFAM: Abortive infection protein; KEGG: abortive infection protein.
  
    0.571
Celf_2881
KEGG: putative transmembrane anti-sigma factor.
  
     0.552
Celf_3108
KEGG: hypothetical protein.
  
  
 0.515
Celf_2422
PFAM: extracellular solute-binding protein family 5; KEGG: ABC-type dipeptide transport system, periplasmic component.
  
  
  0.482
Celf_3401
PFAM: ABC-2 type transporter; KEGG: ABC-2 type transporter.
 
  
  0.452
Celf_2709
PFAM: ABC-2 type transporter; KEGG: ABC-2 type transporter.
 
  
  0.446
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.