STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0230KEGG: transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074. (152 aa)    
Predicted Functional Partners:
Celf_2191
PFAM: aminotransferase class V; KEGG: cysteine desulfurase family protein.
  
  
 0.777
Celf_2755
KEGG: cysteine desulfurase; PFAM: aminotransferase class V.
  
  
 0.777
Celf_0231
PFAM: protein of unknown function DUF81; KEGG: protein of unknown function DUF81.
 
   
 0.775
Celf_1698
KEGG: SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.
  
  
 0.748
Celf_3368
PFAM: Oxidoreductase FAD-binding domain protein; globin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: oxidoreductase FAD-binding domain protein; Belongs to the globin family.
     
 0.660
Celf_0229
PFAM: protein of unknown function DUF156; KEGG: protein of unknown function DUF156.
 
   
 0.641
Celf_0227
KEGG: heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase.
  
    0.493
Celf_0228
PFAM: Heavy metal transport/detoxification protein; KEGG: heavy metal transport/detoxification protein.
       0.461
Celf_0672
KEGG: flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG.
   
   0.426
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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