STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0424KEGG: integral membrane protein. (293 aa)    
Predicted Functional Partners:
Celf_0423
KEGG: kra:Krad_1977 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.935
Celf_0426
Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: integral membrane sensor signal transduction histidine kinase.
 
    0.873
Celf_0425
KEGG: integral membrane protein.
 
    
0.819
Celf_0427
KEGG: two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.
       0.773
Celf_2964
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.750
Celf_1089
KEGG: kra:Krad_2001 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.748
Celf_0422
PFAM: Methyltransferase type 11; KEGG: ach:Achl_0586 methyltransferase type 12.
       0.505
Celf_0657
KEGG: hypothetical protein.
 
  
 0.489
Celf_1314
KEGG: putative ABC transporter integral membrane protein.
 
   0.434
Celf_0421
Hypothetical protein; KEGG: tfu:Tfu_0826 helix-hairpin-helix DNA-binding, class 1.
       0.424
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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