STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0462PFAM: Carbohydrate kinase, FGGY-like; KEGG: kfl:Kfla_0657 carbohydrate kinase FGGY. (487 aa)    
Predicted Functional Partners:
Celf_3309
PFAM: protein of unknown function DUF718; KEGG: hypothetical protein.
  
  
 0.664
xylB
KEGG: xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like.
 
     0.465
xylA
KEGG: xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Belongs to the xylose isomerase family.
  
  
 0.458
Celf_2122
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
 
   
 0.441
Celf_3618
TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase.
      
 0.441
Celf_0461
Regulatory protein MerR; KEGG: transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
       0.428
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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