STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0471PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1459 putative di/TRI-peptide transport system permease protein. (326 aa)    
Predicted Functional Partners:
Celf_0472
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sna:Snas_2621 binding-protein-dependent transport systems inner membrane component.
  
 0.990
Celf_0473
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sna:Snas_2620 oligopeptide/dipeptide ABC transporter ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.978
Celf_0470
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sna:Snas_2623 oligopeptide/dipeptide ABC transporter ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.977
Celf_0469
PFAM: extracellular solute-binding protein family 5; KEGG: sna:Snas_2624 extracellular solute-binding protein family 5.
 
 
 0.937
Celf_1845
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
  
 0.920
Celf_2904
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xce:Xcel_0959 binding-protein-dependent transport systems inner membrane component.
  
 0.902
Celf_2418
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
  
 0.901
Celf_1846
KEGG: ABC transporter related protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.838
Celf_2902
KEGG: xce:Xcel_0961 ABC transporter related protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.815
Celf_2419
Hypothetical protein; KEGG: sna:Snas_3513 ABC transporter related protein.
 
   
 0.767
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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