STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0499KEGG: bcv:Bcav_2118 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Celf_1103
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PspC domain protein; KEGG: putative signal transduction histidine kinase.
  
    0.770
Celf_1064
KEGG: bcv:Bcav_0500 hypothetical protein.
 
  
 0.623
Celf_0649
PFAM: PspA/IM30 family protein; KEGG: phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
  
 0.553
Celf_0498
PFAM: protein of unknown function UPF0027; KEGG: kra:Krad_1410 protein of unknown function UPF0027.
       0.546
Celf_1470
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bcv:Bcav_4157 histidine kinase.
 
    0.541
Celf_2660
KEGG: hypothetical protein.
  
  
 0.531
Celf_3502
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
   
    0.447
Celf_0139
PFAM: PspC domain protein; KEGG: kra:Krad_0132 phage shock protein C, PspC.
 
    0.444
carA
KEGG: carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; Belongs to the CarA family.
      
 0.432
pyrC
Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
      
 0.432
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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