STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0650KEGG: methanol dehydrogenase. (663 aa)    
Predicted Functional Partners:
Celf_0649
PFAM: PspA/IM30 family protein; KEGG: phage shock protein A (IM30), suppresses sigma54-dependent transcription.
     0.939
Celf_0651
TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: hypothetical protein.
 
 
 
 0.590
Celf_0330
KEGG: multiple resistance and pH regulation protein F.
  
     0.487
Celf_2658
KEGG: acyl-CoA thioesterase I precursor.
  
 
 0.408
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.