STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0657KEGG: hypothetical protein. (1042 aa)    
Predicted Functional Partners:
Celf_0656
KEGG: hypothetical protein.
      0.830
Celf_0655
KEGG: cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.
       0.801
Celf_2177
PFAM: protein of unknown function DUF901; KEGG: hypothetical protein.
 
     0.660
Celf_1581
Hypothetical protein; KEGG: scb:SCAB_82651 putative thioredoxin.
  
     0.614
Celf_3382
KEGG: xce:Xcel_3032 hypothetical protein.
  
     0.574
Celf_2043
PFAM: sporulation and cell division protein SsgA; KEGG: sporulation and cell division protein SsgA.
  
     0.569
Celf_0653
KEGG: hypothetical protein.
 
     0.554
Celf_0220
KEGG: hypothetical protein.
  
     0.525
Celf_2343
KEGG: dienelactone hydrolase.
  
     0.523
Celf_0547
KEGG: hypothetical protein.
  
     0.507
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.