STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_0658Diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: predicted signal transduction protein containing EAL and modified HD-GYP domains. (404 aa)    
Predicted Functional Partners:
Celf_0660
KEGG: jde:Jden_2042 flagellar hook-associated protein 3; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein.
 
     0.603
Celf_0661
KEGG: flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
 
     0.600
Celf_0659
PFAM: protein of unknown function DUF180; KEGG: jde:Jden_2043 protein of unknown function DUF180.
       0.532
Celf_0662
PFAM: FlgN family protein; KEGG: FlgN protein.
       0.510
Celf_0663
KEGG: RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein.
 
     0.481
Celf_0669
KEGG: jde:Jden_2029 flagellar basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein.
 
     0.443
Celf_0664
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
     0.442
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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